Publication

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Journal Publications (main)
  1. Yao, W. T. and Wu, H. M.* (2011). Isometric Sliced Inverse Regression for Nonlinear Manifolds Learning, In revision.  (NSC 99-2118-M-032 -006)
     
  2. Wu, H. M.* (2011), On Biological Validity Indices for Soft Clustering Algorithms for Gene Expression Data, Computational Statistics and Data Analysis, 55(5), 1969-1979. [SCI]. [R code] (NSC 97-2118-M-032-001)
     
  3. Lu, H. H.-S*., and Wu, H. M. (2010), Visualization, Screening, and Classification of Cell Cycle-Regulated Genes in Yeast, International Journal of Systems and Synthetic Biology, 1(2), 185-198.  
     
  4. Wu, H. M., Tien, Y. J. and Chen, C. H.* (2010). GAP: A Graphical Environment for Matrix Visualization and Cluster Analysis, Computational Statistics and Data Analysis, 54, 767-778. [SCI] [Software]
     
  5. Wu, H. M.* (2008). Kernel Sliced Inverse Regression with Applications to Classification, Journal of Computational and Graphical Statistics 17(3), 590-610. [SCI] [Supplementary]
     
  6. Tien, Y. J., Lee, Y. S, Wu, H. M. and Chen, C. H.* (2008), Methods for Simultaneously Identifying Coherent Local Clusters with Smooth Global Patterns in Gene Expression Profiles. BMC Bioinformatics 9:155, 1-16. [SCI] 
     
  7. Wu, H. M., and Lu, H. H.-S.* (2007), Iterative Sliced Inverse Regression for Segmentation of Ultrasound and MR Images, Pattern Recognition 40(12), 3492-3502. [SCI]
     
  8. Wu, H. M., and Lu, H. H.-S.* (2004), Supervised Motion Segmentation by Spatial-Frequential Analysis and Dynamic Sliced Inverse Regression, Statistica Sinica 14, 413-430. [SCI]
 
Journal Publications (Consulting)
      1. Yin, S.Y., Wang, W.H., Wang, B.X., Aravindaram, K., Hwang, P.I., Wu, H.M. and Yang, N.S.* (2010), Stimulatory effect of Echinacea purpurea extract on the trafficking activity of mouse dendritic cells: revealed by genomic and proteomic analyses, BMC Genomics 11:612. [SCI]
          
      2. Lin, S.H., Liu, C.M., Liu, Y.L., Fann, C. S.J., Hsiao, P.C., Wu, J.Y., Hung, S.I., Chen, C.H., Wu, H.M., Jou, Y.S., Liu, S.K., Hwang, T.J., Hsieh, M.H., Chang, C.C., Yang, W.C., Lin, J.J., Chou, F.H.C., Faraone, S.V., Tsuang, M.T., Hwu, H.G.  and Chen, W.J. (2009), Clustering by Neurocognition for Fine Mapping of the Schizophrenia Susceptibility Loci on Chromosome 6p. Genes, Brain and Behavior 8(8):785-794. [SCI]
         
      3. Wang, C.Y., Staniforth, V., Chiao, M.T., Hou, C.C., Wu, H.M., Yeh, K.C., Chen, C.H., Hwang, P.I., Wen, T.N., Shyur, L.F., and Yang, N.S*. (2008), Genomics and Proteomics of Immune Modulatory Effects of a Butanol Fraction of Echinacea purpurea in Human Dendritic Cells. BMC Genomics 2008, 9:479. [SCI]
         
      4. Sher, Y. P., Chou, C. C., Chou, R. H., Wu, H. M., Chang, W. S., Chen, C. H., Wu, C. W., Yang, P. C., Yu, C. L., and Peck, K.* (2006), Human Kallikrein 8 Protease Confers a Favorable Clinical Outcome in Non–Small Cell Lung Cancer by Suppressing Tumor Cell Invasiveness, Cancer Research 66, 11763-11770. [SCI]
 
Conference Publications
      1. Wu, H.M. (2011). Nonlinear Extension of Sliced Inverse Regression using the Geodesic Distance Approximation, Proceedings of the Seventh IMT-GT International Conference on Mathematics, Statistics and its Applications (ICMSA 2011), 312-322, July 21-23 2011, Bangkok Thailand. 
      2. Tzeng, S.L., Wu, H.M., and Chen, C.H.* (2009). Selection of Proximity Measures for Matrix Visualization of Binary Data, Proceedings of the 2009 2nd International Conference on BioMedical Engineering and Informatics (BMEI 2009), 1932-1940, Tianjin, China. [EI]
      3. Chen, C. H.*, Hwu, H. G., Jang, W. J., Kao, C. H., Tien, Y. J., Tzeng, S., and Wu, H. M. (2004), Matrix Visualization and Information Mining, Proceedings in Computational Statistics 2004 (Compstat 2004), 85-100, Physica-Verlag.
      4. Lu, H. H.-S.*, and Wu, H. M. (2003), On Visualization, Screening, and Classification of Cell Cycle-Regulated Genes in Yeast, The 14th International Conference on Genome Informatics (GIW2003), 344-345.
         
Book Chapters
      1. Wu, H. M., Tzeng, S. and Chen, C. H.* (2006). Matrix Visualization. In Chun-houh Chen, Wolfgang Härdle, and Antony Unwin, editors, Handbook of Computational Statistics (Volume III): Data Visualization, Springer-Verlag, Heidelberg.
 
Manuscripts
      1. Wu, H. M., Tien, Y. J, Ho, M.R., Hwu, H.G., Lin, W.C., Tao, M.H., and Chen C.H.* (2011). Covariate-adjusted Matrix Visualization via Correlation Decomposition. In revision. [Software Instruction] (NSC 97-2118-M-032-001)
      2. Wu, H. M. (2011). VisFuz: Visualization of Fuzzy Clustering Results in R.
      3. Wu, H. M. (2011). Iterative Fuzzy Sliced Inverse Regression for Unsupervised Segmentation of MR Brain Images.
      4. Hu, C. Y., Wu, H. M.* (2011). jSDRlib: A Java Library for Sufficient Dimension Reduction.
 
Conference Presentation
 
Posters
      • Wu, H. M. and Chen, C. H. (2004), Adjustment and Evaluation of Gene Expression Clustering Results Using Conditional Matrix Visualization, 2004 Taipei Symposium of Statistical Genome, December 2004.
      • Wu, H. M. (2004), Generalized Association Plots with a Covariate Adjustment, COMPSTAT 2004 Abstracts, 351. [The final ten commended posters from a total of more than 160 participants]
 
Thesis
      • Wu, H. M., and Lu, H. H.-S. (2003), Statistical Applications of Dimension Reduction to Segmentation of Medical Images and Classification of Microarray Data, PhD Thesis. Institute of Statistics, National Chiao-Tung University.
      • Wu, H. M., and Shih, Y. S. (1997), Resampling Methods on Classification Trees, Master Thesis. Institute of Mathematical Statistics, National Chung -Cheng University.

 


2012-spring